(For a full list see below)
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Mason, M. et al. A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer. J Transl Med 22, 190 (2024). Cite
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Cossu, A. M. et al. MiR-449a ANTAGONIZES EMT THROUGH IL-6-MEDIATED TRANS- SIGNALING IN LARYNGEAL SQUAMOUS CANCER. Molecular Therapy - Nucleic Acids 102140 (2024) http://doi.org/10.1016/j.omtn.2024.102140. Cite
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Petralia, F. et al. Pan-cancer proteogenomics characterization of tumor immunity. Cell S0092867424000643 (2024) http://doi.org/10.1016/j.cell.2024.01.027. Cite Download
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Feng, S. et al. Decomprolute is a benchmarking platform designed for multiomics-based tumor deconvolution. Cell Reports Methods 4, 100708 (2024). Cite
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Ramsoomair, C. K., Ceccarelli, M., Heiss, J. D. & Shah, A. H. The epitranscriptome of high-grade gliomas: a promising therapeutic target with implications from the tumor microenvironment to endogenous retroviruses. J Transl Med 21, 893 (2023). Cite
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Hu, L. S. et al. Integrated molecular and multiparametric MRI mapping of high-grade glioma identifies regional biologic signatures. Nat Commun 14, 6066 (2023). Cite
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Besharat, Z. M. et al. Circulating miR-26b-5p and miR-451a as diagnostic biomarkers in medullary thyroid carcinoma patients. J Endocrinol Invest (2023) http://doi.org/10.1007/s40618-023-02115-2. Cite
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Rosaria Noviello, T. M. et al. Guadecitabine plus Ipilimumab in Unresectable Melanoma: Five-Year Follow-up and Correlation with Integrated, Multiomic Analysis in the NIBIT-M4 Trial. http://medrxiv.org/lookup/doi/10.1101/2023.02.09.23285227 (2023) doi:10.1101/2023.02.09.23285227. Cite Download
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Migliozzi, S. et al. Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nat Cancer (2023) http://doi.org/10.1038/s43018-022-00510-x. Cite Download
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Feng, S. et al. Decomprolute: A Benchmarking Platform Designed for Multiomics-Based Tumor Deconvolution. http://biorxiv.org/lookup/doi/10.1101/2023.01.05.522902 (2023) doi:10.1101/2023.01.05.522902. Cite Download
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Wang, J. M. et al. Deep learning integrates histopathology and proteogenomics at a pan-cancer level. Cell Reports Medicine 101173 (2023) http://doi.org/10.1016/j.xcrm.2023.101173. Cite Download
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Liang, W.-W. et al. Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin. Cancer Cell S1535610823002532 (2023) http://doi.org/10.1016/j.ccell.2023.07.013. Cite
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Di Giacomo, A. M. et al. Immunotherapy for brain metastases and primary brain tumors. European Journal of Cancer 179, 113–120 (2023). Cite
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Mason, M. et al. A Community Challenge to Predict Clinical Outcomes After Immune Checkpoint Blockade in Non-Small Cell Lung Cancer. http://biorxiv.org/lookup/doi/10.1101/2022.12.05.518667 (2022) doi:10.1101/2022.12.05.518667. Cite Download
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Anichini, A. et al. Landscape of immune-related signatures induced by targeting of different epigenetic regulators in melanoma: implications for immunotherapy. Journal of Experimental & Clinical Cancer Research 41, 325 (2022). Cite
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White, B. S. et al. Community Assessment of Methods to Deconvolve Cellular Composition from Bulk Gene Expression. http://biorxiv.org/lookup/doi/10.1101/2022.06.03.494221 (2022) doi:10.1101/2022.06.03.494221. Cite Download
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Anichini, A. et al. Landscape of Immune-Related Signatures Induced by Targeting of Different Epigenetic Regulators in Melanoma: Implications for Immunotherapy. http://biorxiv.org/lookup/doi/10.1101/2022.04.13.488140 (2022) doi:10.1101/2022.04.13.488140. Cite Download
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Chan, S. et al. An anti-PD-1–GITR-L bispecific agonist induces GITR clustering-mediated T cell activation for cancer immunotherapy. Nat Cancer (2022) http://doi.org/10.1038/s43018-022-00334-9. Cite Download
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Sayaman, R. W. et al. Analytic pipelines to assess the relationship between immune response and germline genetics in human tumors. STAR Protocols 3, 101809 (2022). Cite
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D’Agostino, Y. et al. Loss of circadian rhythmicity in bdnf knock-out zebrafish larvae. iScience 104054 (2022) http://doi.org/10.1016/j.isci.2022.104054. Cite Download
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Saad, M. et al. Genetic predisposition to cancer across people of different ancestries in Qatar: a population-based, cohort study. The Lancet Oncology S147020452100752X (2022) http://doi.org/10.1016/S1470-2045(21)00752-X. Cite
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McLaughlin, R. T. et al. Attentive Deep Learning-Based Tumor-Only Somatic Mutation Classifier Achieves High Accuracy Agnostic of Tissue Type and Capture Kit. http://biorxiv.org/lookup/doi/10.1101/2021.12.07.471513 (2021) doi:10.1101/2021.12.07.471513. Cite Download
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De Falco, A., Caruso, F. P., Su, X. D., Iavarone, A. & Ceccarelli, M. A Fast Variational Algorithm to Detect the Clonal Copy Number Substructure of Tumors from Single-Cell Data. http://biorxiv.org/lookup/doi/10.1101/2021.11.20.469390 (2021) doi:10.1101/2021.11.20.469390. Cite Download
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Petralia, F. et al. BayesDeBulk: A Flexible Bayesian Algorithm for the Deconvolution of Bulk Tumor Data. http://biorxiv.org/lookup/doi/10.1101/2021.06.25.449763 (2021) doi:10.1101/2021.06.25.449763. Cite Download